Scaffold Ga0163110_10275532

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10275532
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1222
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000896	Metagenome / Metatranscriptome	845	Y
F037233	Metagenome / Metatranscriptome	168	Y
F060981	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_102755322	F000896	GGAG	MTNKINMVINLSILALLIYLSVSIKQLQDKVFPDPNVMIPLMGYDNSKQELEYNIRQFLNNALTQAIEEQEKN*
Ga0163110_102755323	F037233	AGGAG	MEDLDKILSDIAQEEEKGFADEWWCQDCEHGPMNEKDDKCDRCGAKNSQYHGSDEITGWEDEDIESEVEEIW*
Ga0163110_102755324	F060981	GGAGG	MVAVMSQDTKDRIANLERQKIDLNNRIERLSYSGNHAKMLELEQEVWEIEDTISKLMP*