Scaffold Ga0160423_10010810

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10010810
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7117
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100108104	F077304	GAGG	LTNFDFTKVLLEKKRPNIGEIELTLFENCHLNCAFCHHDKKSTVGLSREGIFSKIPLVEDHLKKMQGMVKTCQINMVGGELFQDRISEWAYDVYYDMLIEIKKLYDKYEQEIKVVWVTSFQFSKRDRVQKLLDDLNEADIPSYIICSYDFDGRPVRGPYGKNIEYFADYITSINMVATVPSIERFMKDDDEYFHYLYNKFDNFYFDDYIPDKGFDHLIPSDSLYLDFLTFIFHNYPDINPISDLIKNENNHMHCMALNKVTIFPNNSISNCRWDRYTKSDFNTPLNRQDNASMMQAYMDEHGCLSCKWWDKCGFRCYTQWDWKNRARDLPDCVMRMWFNYMEKVNL*
Ga0160423_100108107	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQMDVLDGCHHKCPGCFVHRRGNASNVDQLAQAKKFVKSITDKGILVDEILIGPTDFLASENFYEVMPELEDMINDNSPILAFVSTLIDGDIVQFCDWITERINLDTEIEIGIATNPHKFSEKNYLQNIKDKLYYIDKNLEHEVTYTFVVNIRDYGLDYTVLHDKVVKEFSTILDFIPSVSRSHKPNIILSTLSKFNEYFNEISKDTKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDSLKVESFDDVVPITESQINRAKGTECEDCQLFFSCYNRKIILLRDYLGVKHCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKRGYRKKFLVTKDNDPELERIKNISYVK*
Ga0160423_100108108	F042905	GAGG	MIRLNDTYAGYYTYDKDHSPSNIDFLRTEINLDILHGCDQMCPGCFIPRKNLTNADHLKDLYELLVKGQYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVVKEKLEKIWSLYAHIKRIPDIDFKIVLDVNKYLDGELDDWCKKLKLFENGSVQFRVNYYKGVFDRISYNELCQKAYDEFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLDQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVAIKEYMYAPH*