Scaffold Ga0160423_10010042

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10010042
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7418
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F026741	Metagenome	197	Y
F030600	Metagenome	185	Y
F058958	Metagenome / Metatranscriptome	134	N
F099995	Metagenome	103	N
F100996	Metagenome	102	Y
F106098	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1001004212	F106098	GGA	MNGVPVWLELKIVKNGRVSLSKSQIAWHSSHFRCKGVSFFLLHDPSTSDLFLFGADKAIELLGSRIDDLRPAALYIGDMRGLIESLRPAACALWSDAMMSR*
Ga0160423_1001004213	F100996	AGGAG	MQHLNNYQKLDWISFAIQEALNGNDGELMQALELVEDLREAADAAN*
Ga0160423_1001004215	F030600	GAGG	MAKIYYHTPRASGGGLVVWSVGDSLTEIGKTLAKLNQIWPDSSSEGQVITIGKKQRGRHGIRPIKEYRLHGDKLVKIYDLYSYVENSEWVEAHVTMRRS*
Ga0160423_1001004218	F058958	AGG	MTLRNQIIEQLGGRLFTATYTKADGSLRHAYGQVIADDRLTDDHPNVITYIDYSIAADTFAEGKSNVRRMKLEAGTVYTIKSGKTVISNVA*
Ga0160423_100100422	F099995	AGGAG	MAFLYKGTDNWSGIKWCVRTVYWHDSYGLNDMCTYGGDYNPYESPDNPLVEFYDMDSLVANMETGDEEYDARIKERGQFVSRYYLNTLNGTDRGTHASAPQFEDNWANGLNLDGGIERWSISGEFYTKAMQAVNADFREWRDKNDA*
Ga0160423_100100423	F026437	AGGAGG	MKYYIGTIDEQHGEFEVEQSFLFATAGDDNQLMEQLAKDWYGLDHHDSDGLSEGMYWNGGMAYGAGCHYEVTKATYDELKDKRVFTEIYADEEME*
Ga0160423_100100428	F026741	AGTAGG	MTNDKPNLTDSHFAEVLAEPFAELLKPKKFYPTIMVEYTPNKEAWEEIAETIWVGALEGGSGHWIDGIHTEDEFDLKNGYSVVEYNFDIAIHHGSDGWGDDDVDIERVKAFDVIVDGINLLDPERQRLALTVDELGQLDANDYDLIIQLGVFGKEVYC*