Scaffold Ga0160423_10008837

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10008837
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7967
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100088372	F028356	GAGG	MFFKLTSRNAYRDLVRNCRRICLSELSDNEKSEAFQELFKLLSPKLDETERSLNSQTAYAKRCEHWNELDVASIKPVKTEKNPWLLFKREFVNAMSQPVEFHAKRVSVALAWFYAAPYKDDWVQ*
Ga0160423_100088375	F020467	AGGA	MHKRPSLSEAKAVLSQHSPETMEEYYELKESHGEFFAARFIVDIVDHYNHLKELKNTVNG