Scaffold Ga0160423_10001316

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10001316
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20807
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066697	Metagenome	126	Y
F081880	Metagenome	114	Y
F082554	Metagenome	113	N
F101195	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000131613	F081880	GAGG	MPISSVKFGTSAAGANSSTYSPDQNPNIGTEISKKYDGIKVKKSLGGETYTFANHESSRRQRRLIYENISEANKNKLVALFDYAKGQKTSFFYSEDGFSTNGFEVRFVNNKLPVTETAYNVYRVDINIEEQL*
Ga0160423_1000131619	F082554	GAGG	MLKLNPEETQVLKYILRSHWVKRLPPAIKEVAFDVKNAMEKPKVVTQEEYIGLNPNWKHCENCDD*
Ga0160423_1000131622	F066697	AGGAGG	MMTLLLKTQQELHKNNTKWNNVIEKIKKINFKKYDSNQTVGFIIDDIVKGEFINETK*
Ga0160423_100013167	F101195	AGGAG	MAKKYKLKDELMPRKPSFLRLDYSDWAKLNSGKSVELDRVPELAKDYLEEVKSKVKEVK*