Scaffold Ga0160423_10000841

Overview

Basic Information

• Taxon OID: 3300012920
• Scaffold ID: Ga0160423_10000841
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25558
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 8.7051
  • Long. (^o): -86.4906
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F050380	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_1000084111	F032280	N/A	MPDQITLKAINLLREADPNLDEMNSLDKFIAHQNEVIKMYKQFEGHPQAEKLKPRLKVFEESALAFTWVHTQMLAYKREKLLANANEMEMANAVIELKQELDILTKLNKSD*
Ga0160423_1000084112	F019648	N/A	VTKNELNLLDRFASKYKIDCVPSEGKYDFWDFTYKWDNRKFYCEMKQRNFTLDKAKSEYPEGLILEMHKYERILRKTKNKKLSQGLYINFFDCDSVLVFNLNKTKINKWVWRTMPESTDFGRTKFVYKYITFLEYDKGKVLYI*
Ga0160423_1000084124	F009843	N/A	MKKVELGGKKRSIRFSYLCVKDICRKTKLGLNELHKLGTEIDHVGILTYFGLKHGAKHQGEEFKYKLQDIEEWLDNEDFSKLNEIFEAFQLDQPEQEGNE*
Ga0160423_1000084128	F050380	N/A	MAINTGIRVQRIQDVQRSLKELGKTSKESRTAINKALRPAANMLARGIQKAYQDEFKYETRVGNKVFKRKRKAGRTPTWKTIGIITARKSRQPGLFVGPIKRKTTPITVKGKDSYNLAAMQIKGNKIPQAPRPNVFEATARKMESQIYTQAEKDLDKLVDRMIKQAGFK*