Scaffold Ga0160422_10326440

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10326440
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 947
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_103264402	F006217	AGAAGG	MIELLLSVIEEPNQIHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKDNPHYKYPGMALPNGKIKPLDVCWGSDKTYYIGSDKVKRSKC*
Ga0160422_103264403	F029123	AGGAG	MSYEVWFGQNGKWFGYHSFKHKMDAQRYEERYKKVFPNLTVELRRREHGSCS*
Ga0160422_103264405	F015102	N/A	MQEETEDGENPNTPFDDVTHWVGNLPSKDTDSIERPIKRYSWWQTKSNILRKKLGVETKRED*