Scaffold Ga0160422_10024923

Overview

Basic Information

• Taxon OID: 3300012919
• Scaffold ID: Ga0160422_10024923
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3462
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F023710	Metagenome / Metatranscriptome	209	Y
F024645	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160422_100249234	F000896	GGAG	MTNKINMVINLSILALLIYLAVSVKQLQDKVFPDPNIMIPLTGQYDMGKEELKYNIQTLLNNALKEAIIMQEAVND*
Ga0160422_100249237	F000302	AGGAG	MKTMTQEKKDQIRELERQKIALEDQLEFVGNNLVKMVKIEEEIYEIEDTIGKLTA*
Ga0160422_100249238	F024645	AGGAG	MKIKKEYYITELHMGDDGLEDYSDHSGPYTLRKARNIMERLLKGNDPWVNPYMMSIRGPRHINGYGHNTEFYSHREDR*
Ga0160422_100249239	F023710	GGAGG	MDKNVEKKIENFVRAELAGVHRIDFTHGTLYLVLDKPGICDFVHKELRTFYKENINPEGGVNMYAVGDEFAFDFVPADAENPVFTDEEESDVDIALNLEA