Basic Information | |
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Taxon OID | 3300012919 Open in IMG/M |
Scaffold ID | Ga0160422_10024923 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3462 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | The Central Pacific Ocean | |||||||
Coordinates | Lat. (o) | 10.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 60 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000302 | Metagenome / Metatranscriptome | 1337 | Y |
F000896 | Metagenome / Metatranscriptome | 845 | Y |
F023710 | Metagenome / Metatranscriptome | 209 | Y |
F024645 | Metagenome / Metatranscriptome | 205 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0160422_100249234 | F000896 | GGAG | MTNKINMVINLSILALLIYLAVSVKQLQDKVFPDPNIMIPLTGQYDMGKEELKYNIQTLLNNALKEAIIMQEAVND* |
Ga0160422_100249237 | F000302 | AGGAG | MKTMTQEKKDQIRELERQKIALEDQLEFVGNNLVKMVKIEEEIYEIEDTIGKLTA* |
Ga0160422_100249238 | F024645 | AGGAG | MKIKKEYYITELHMGDDGLEDYSDHSGPYTLRKARNIMERLLKGNDPWVNPYMMSIRGPRHINGYGHNTEFYSHREDR* |
Ga0160422_100249239 | F023710 | GGAGG | MDKNVEKKIENFVRAELAGVHRIDFTHGTLYLVLDKPGICDFVHKELRTFYKENINPEGGVNMYAVGDEFAFDFVPADAENPVFTDEEESDVDIALNLEA |
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