Scaffold Ga0137395_10002887

Overview

Basic Information

• Taxon OID: 3300012917
• Scaffold ID: Ga0137395_10002887
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8420
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004357	Metagenome / Metatranscriptome	442	Y
F058483	Metagenome	135	Y
F086928	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137395_1000288713	F086928	AGGAGG	VERLRFQQLPMLVRVVVGLSLFNAWVSFEEFVVDRVGLWKYMPGYKVGQGCVWDLTVGALIIAGLVWASVGGRRSEPPDAVRSSR*
Ga0137395_100028872	F004357	N/A	VLPPVFERARMSTRDSQLDKHLEALFGGLDTAAEFDTRLMARLQAESRTDAAERAIRAQQERLRYRKARLELKSWRHSMLRLLTLDTLGIAVLLVVAIVTAWPHLDRDVMDISRQYVPYIATLLGVLVAAVPLVGTWVERTRGPVSLR*
Ga0137395_100028874	F058483	N/A	MPKPESAMKDTLSAAVIGAIVGYLTHRHWPEIDWVLRILSG*