Scaffold Ga0157297_10000958

Overview

Basic Information

• Taxon OID: 3300012914
• Scaffold ID: Ga0157297_10000958
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5701
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014856	Metagenome / Metatranscriptome	259	Y
F094044	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157297_100009581	F094044	GGAGG	MAEAVSRLRAPRDHAVEFDPDTPTDPVRDHAGQQLRCSFCQVGLGEGIGLTTHGFEKQRHRTTSSSFCSTRCRDCVLALAELHPSPLATDDFIARRALLTDRLLDLWRHGQGPDPALVLEAARTASSGLVSADNA*
Ga0157297_100009586	F014856	AGGA	VTIGPYRQSVQDEIMTSALVRAAGNLLDDLVDRVLRNEERVATAAEGKLLIAADDGMEEVADRVQRFVAVATPTVRVLARGARFTRVPWVLVASTAVSLTTTVRAGVREVRVLGSLLAFRLEQVNGAPADPALVKKLAVELYLAPKRKPDVARLDLPLAKLARRWLFRGVFGRDTRRAAEKALDAAEQLDLDHVLETRRTGN*