Scaffold Ga0157285_10005223

Overview

Basic Information

• Taxon OID: 3300012897
• Scaffold ID: Ga0157285_10005223
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2361
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015802	Metagenome / Metatranscriptome	252	Y
F074853	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157285_100052231	F074853	GAG	VTVFVDRGGVTPNPTRFALYSVALGSPAGATTGGDFRFSCSATQAPCKISYGAAVISTTQTADAVVHPRLLIHKDLAAPITFCEYADGANNNAGLDPISRVATLAAAVTAMQTPLDMGIGGSLDCGAAQPDPPPVGVVPEIWVPEGFYDVAATFAFGLTLDLPPGP*
Ga0157285_100052235	F015802	GAG	MATQPDPQLEAARRELADLYRRLAAARPFSWSRMGTQRQIARVKRRIEQLERNN*