Scaffold Ga0138284_1358194

Overview

Basic Information

• Taxon OID: 3300012779
• Scaffold ID: Ga0138284_1358194
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1308
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F033041	Metagenome / Metatranscriptome	178	Y
F082677	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138284_13581941	F082677	N/A	DKFNGLSKGQVKQIIRRNMITRVKTSNKVYDRKKEKRGLAFGD*
Ga0138284_13581942	F033041	N/A	MVRIKINSNFKFTFDTDVELRRAQSSGYIESYDMVRICIKRLDNGNQVDFPIKSREDYFDQVASLNERSNEYDMVEIYQDTHSFDMYDYI*
Ga0138284_13581945	F011488	AGGA	MTNEELIEELYHKAHAKGFFHELHDKVKQVKQSGIKECEHRLVQKAYSELKKIKL