Scaffold Ga0157566_1048258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157566_1048258

Scaffold Ga0157566_1048258

Overview

Basic Information
Taxon OID	3300012749 Open in IMG/M
Scaffold ID	Ga0157566_1048258 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES066 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157566_10482581	F037570	N/A	IRNLKFRASQRQAIIDRLLRKRDLEKDLWKVSVKTLIILAKIKFRCEELERISENSQQTVINGY*
Ga0157566_10482582	F039941	N/A	MDIETLALRLEEVKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYKQQSG*

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