Scaffold Ga0157615_1300807

Overview

Basic Information

• Taxon OID: 3300012734
• Scaffold ID: Ga0157615_1300807
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES144 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031011	Metagenome / Metatranscriptome	183	Y
F060845	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157615_13008071	F060845	N/A	SLNVTNEHDMYTVSGLNCSATPISIAWEVAGTSAAPANIDRQATSNGNIWATGATNATPIMIACYTSRLEISAGRNVLTFT*
Ga0157615_13008072	F031011	N/A	MFDEYNAMTNYMTYDSSSLNQYNYKNLNDNFPIYQQYENIYNFTRQINPITLSNVNAQTRDPSNLPSDIRPTIYDGMDGVYGLHSMNDIVQHQTRFNNPNNWQDNVQRQPGYYNHDEHTLKNKRPISYIQIGQATSNQDINGYLIF*