Scaffold Ga0157606_1169149

Overview

Basic Information

• Taxon OID: 3300012733
• Scaffold ID: Ga0157606_1169149
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051122	Metagenome / Metatranscriptome	144	N
F058141	Metagenome / Metatranscriptome	135	N
F060902	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157606_11691491	F060902	AGGA	MVDPKLTQQVIDKLLSVPQCIESVRQVPCYDYEARFGAFIRVKCGIILLSAIDW
Ga0157606_11691492	F051122	N/A	MTKQEYKIQLSALKSTLEIVLIEADKKGQEISTAYECGMYIGTIKAVISHLEELVKDNG*
Ga0157606_11691493	F058141	N/A	MKIRIENIECRFSQNQYEFVRWYPNKYFGTKAQLIAEGYELIASQDDDFSLVKHNHRIHGSCFQSPESCYVIATIVYDKNEYCTEIKSVGSRLLDLTKKERMYFFEVYRYADKQIKKENKNKDND*