Scaffold Ga0157609_1159576

Overview

Basic Information

• Taxon OID: 3300012717
• Scaffold ID: Ga0157609_1159576
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES135 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1437
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F032581	Metagenome / Metatranscriptome	179	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157609_11595761	F060863	N/A	MLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDSANAAEVAFINCLEVRMYNL
Ga0157609_11595762	F001129	N/A	MPTPILQQMLGQGGTMEFINGTVTGKNYDFLVINTAATFTTLTGTGSENLLTAYNFSGASISAGIVISGRNGGKITAVTPSVGSVIGFTFL*
Ga0157609_11595763	F000847	N/A	MSWIKIKQALLDLANNHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT*
Ga0157609_11595764	F032581	N/A	VRRTSEESSQMSMEEITRLTDKVKNDAEWYSERITRYLMENRNSYPLWNSPPSALDTIYPNATNYRTGMVLDRNRRMGISNLDYPYPYGQFGACNDC*