Scaffold Ga0157541_1222506

Overview

Basic Information

• Taxon OID: 3300012688
• Scaffold ID: Ga0157541_1222506
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES030 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 719
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088926	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157541_12225061	F088926	N/A	QNLAVPKTYNEMFAFNAAVMGFGGHTWMNEILKSFDAIVMNVANSYRLQEECDVLSLRMAKYQATMNLAEYKAVMLASLRSLVKDWGSQHEVAWSWLWENVERMIKALLGKPAAQQLALSQLFGSLDDKARQTIRREVYAQFFAIAPAGQDYFKQSTTRLHFIADKLVQMTIDIYKEPQRMVEEISALGLRHVGYGIPTDLFGPFVTACVQVVRMLTTDDAAEEAFRWSLSLISRILTR