Scaffold Ga0136614_10012215

Overview

Basic Information

• Taxon OID: 3300012684
• Scaffold ID: Ga0136614_10012215
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6099
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0526
  • Long. (^o): 163.748

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030320	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136614_100122155	F030320	AGGCGG	MLLPGMDGFVLSERWNGWSRLDTMVEAARAAIAAGPLDPVVCEVTLEGDEDTVTLTNLDELDALLAAGADPLSLDIYVAHVVEAEASLLLVYNGRWLQVNGVGSDWPRARQAYDAAQVELALVYGITTFKLPELPVDTVAETRRRIGAKDQDPGRPAEPGSPPARDR*