Scaffold Ga0136614_10009995

Overview

Basic Information

• Taxon OID: 3300012684
• Scaffold ID: Ga0136614_10009995
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6644
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0526
  • Long. (^o): 163.748

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F005142	Metagenome	410	Y
F062353	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136614_100099952	F004425	GGGGG	MSAWQLLPAVRELYSRLPEMYYLEPWELQHVLFSLGYTGDLADEAEIAAAVEVARGDWPQWRAA*
Ga0136614_100099953	F062353	GGAG	MTRILRCAACARRIRPHHPHIGVEDLATGEEFSYHARCRERCAEETAARMERGKAYVLHHYHSTLCPDEAPDFGCAGGCFDTQTAAAN*
Ga0136614_100099954	F005142	AGGAG	LTIEILEAAMTRPDVNGTPALPKRNGPKGLLPSTWLERTLKLEYTDCHGAGRETTGTLLDVYPFGPVLSLSGEKTVLSWDCLRAVTLIND*