NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136613_10002474

Scaffold Ga0136613_10002474


Overview

Basic Information
Taxon OID3300012681 Open in IMG/M
Scaffold IDGa0136613_10002474 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9913
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.049Long. (o)163.698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050947Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0136613_100024743F050947AGAAGLCYVRALARDRDLWWRGSVLRTIEAEGERVERRRSAVVEIRKHLAGLYRSFVLWASLYGEVDDHYEKERREQVVGLLDELSNQYLPRSVWLTEDSRKKVENFVIRSEELCSEFSAEIEDQGYPRVRRSMERRVSKKLRPLKTEAESGLEAELAEPRRPGWRERLRK*

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