Scaffold Ga0136616_10008827

Overview

Basic Information

• Taxon OID: 3300012679
• Scaffold ID: Ga0136616_10008827
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5220
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0577
  • Long. (^o): 163.7401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030746	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136616_100088276	F030746	N/A	LTTAVLPTGDAAGTIATTTAGLIEFSATLSWDRLEDVPEAPTLPALPKTARCSVVETDDLARCRREILAEILALSERDLGSALETVLRSLTTTAALSEAVLETRTARVTPPRSAPAATLQALALDLWESGYRVGFAPSWTPVPEGVVGLGVLGAEQELLDFLLAHPSWRVA*