Scaffold Ga0136615_10006792

Overview

Basic Information

• Taxon OID: 3300012678
• Scaffold ID: Ga0136615_10006792
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5843
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0557
  • Long. (^o): 163.7304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F040490	Metagenome	161	Y
F054580	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136615_100067921	F040490	AGGAGG	MTIAHPAPPTTEDQDHPHACLNGYVYLGYTAFDEETGEEVERVEALPCRRCAERS*
Ga0136615_100067924	F004425	GGAGG	VSSAQILLASVRYLYSRLPETYLLEPWELQHVVFSLGYADDLAAEAEIAAAVEVARSDWPQWGSAA*
Ga0136615_100067928	F054580	GGAGG	MTKCSGITQAGTACKGIPIDGSQWCYVHHPDHAEERRRHGSRGGKRGGRGRPSVELARLQARFEELAEKVLSGEVERGVGAVVGQLLNGARACVRDGLAAREQEELIARMEQLEEALEAKESRYGA*