Scaffold Ga0153928_1009642

Overview

Basic Information

• Taxon OID: 3300012677
• Scaffold ID: Ga0153928_1009642
• Source Dataset Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2795
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: New Jersey, Wharton State Forest
• Coordinates
  • Lat. (^o): 39.7096
  • Long. (^o): -74.6638

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056117	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153928_10096422	F056117	GGA	MKEKLVYSAVTNAEYVHLIQDVNAWYIDYIIGVAFRTPINFTDKMNGLLESGRRYREFSDYKDMQDYLEEITGQEIVLESSINPETNTEFDNKIVWDTSEYRN*