Scaffold Ga0157208_10012354

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10012354
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1177
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F025743	Metagenome	200	Y
F079977	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_100123542	F079977	GGA	MSDLYSILAEWYPEGNYTEADLWEAIAEAEGVDVNEIMDRDLAEFI*
Ga0157208_100123543	F025743	GGA	MTDTIKVMELVYADLLTPSQLMEGDLINIDNEVVEVILIEDDATGDNYVITYRNDYGEDNEYSCNYEEMFKLYVFVEEE*
Ga0157208_100123544	F002515	N/A	MKQKKTQEELRILMELRRSNAASAVPNKKKYQRNRQSTRFLIDLNKERE*