Scaffold Ga0157208_10004165

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10004165
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2455
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012869	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_100041652	F012869	AGG	MIAIHTKFISPTNSRGARIKAYTAGYGDFKGFAAVISYPYELSGEKCHFEAVKALVKKHNLDWNLEDMRFGDSADGRGFSFCFDASKI*