Scaffold Ga0157208_10000476

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10000476
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11690
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F035767	Metagenome / Metatranscriptome	171	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_1000047611	F101173	AGTAG	MGVRFSTTVYNEKSRKITVSIKDSSFSGTVKTFDTLSLGIQYDSESQQGQERFTPIIGSRCSLSLLINNEDLQTLLLDIGLAVEGRFTMELTAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQENLVANSLPVLHTIFNWHENTIAYNAASDYSLLTVIQHRAFYHKDTKSNYVYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYSRTPATKRYFKYNAFGIQQSGTFTADLTLSNIQTNLPGSDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNTTPVITTTPTLDASNPDARLSYTGILGFYAQALNPVNFEPFQFVFAVKVASIINSFPLQGFESANWTLGSGWLIDNKILEGTLIATEAFYTTFTVTSGRKYYVKIKVDIENSGSLRLRLGGVTKTITESGDYDYVILSTNTDTLKLDSVSTPKFTGKIKSLQVKQENKYLKRGVTYTNGFNFQLEPATWENTFYEYEFNTETITADAAFVAYKTITFDTLDIPESAEYVWEMRLKEMRNEAGTNIISNFAVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTVFSLDTYIGDGPSKTTDGGLKVLESGTYENSSSWDVGNGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSLDLKTEIWQGDYFKIELDA*
Ga0157208_1000047612	F008815	N/A	MPNYTERTVLSKPRDFNQVANNAGSGGVVNNNVTETINNVTVTGSAIAIFNQEFLDTTSNILTWTQNSGKLPTTNLLAAIHVYQNGQKLIDSQYTITLPSTITIDSNSHYDGSNYIVFAININ*
Ga0157208_100004764	F035767	AGGA	MGYLSAKQINHLKDLQKDNYRGRRSFQGMSLRIVGLADSVIEFAELMEQCTLKEQSRVIDSATPIALEVYRSLVPVSSKPHRISTNPFKNKKMQGWEENDRASMWVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQVS*
Ga0157208_100004768	F006590	N/A	MKTITIANTSIPIKFGMYVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYNLQSFCDLVDTDMGGITCIMEMISNEISPPEDESQKNVVAKAESSHLNTSNAFVSEF*