Scaffold Ga0157208_10000021

Overview

Basic Information

• Taxon OID: 3300012667
• Scaffold ID: Ga0157208_10000021
• Source Dataset Name: Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49747
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Keswick, Ontario
• Coordinates
  • Lat. (^o): 44.22385
  • Long. (^o): -79.4212

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030096	Metagenome	186	Y
F083775	Metagenome / Metatranscriptome	112	N
F084231	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157208_100000212	F084231	AGGA	MVSITTEVEVYMDDFEDEDLIEELTERGYYVSKSSGDIPVAQSLYDAWVYKTGNFEDLFRQFCQHTVGRSF*
Ga0157208_100000215	F030096	GAGG	VVNFDITMKWMEYIRNNPDNAYRFSENFWSSQIESKKWLLECIPEDAHTICIFGGWYGILAQFIAEKFPDSYIVTTDLDPSTDDVFYQINTSENIYHRTWDMRDGIPNSLCPDLVINTSSEHVTQEVYDSWWNSIPTGTKYIVQGNNLANPEHVRIADNLDHFLKLNNIKDPQYAGMLKCGHFYRFMGVGIK*
Ga0157208_1000002150	F083775	GGA	MKTILMLKYGTKYSKEDVERIIEATGGKYNYACITDDTTLDPRVKIIPLPEDVDGTFIKIWMYSLEDLGDVLYFDLDIRIQKDIDNLWNYLDERPTICYTYWKDISWVDKNARSYSEQYLSNYNSSAVLWRSGSPKAKEIWEHFEKDMDYYMIKYWGDDRFLWHEKFDFKWFPKGEFYSFLYGADYYDPEKRIVDRYRPEYTVCLLNGLDYFPGYDKKYDELSNNQMG*