Scaffold Ga0157498_1009822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157498_1009822

Scaffold Ga0157498_1009822

Overview

Basic Information
Taxon OID	3300012666 Open in IMG/M
Scaffold ID	Ga0157498_1009822 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1531
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10098223	F010155	AGTAG	MKDCSNNVRTIYVNALNGNITYNSKSVPVYGQDPFRTMPQNYVIISSITEVANNNNHKFQNIVSVDIDIFSEQYRVNDLSVVDNIAGQILNILIPDTKIDGFSDSDFIVYPTSRTNSLYLPLYNGDNYVARKIITINNLVNQK*
Ga0157498_10098224	F011844	N/A	MAQILGXXXXILGAAQAIDIDVTNTGTPSTVWDSLVCLRTSSVNGTVDATTDQTNCGVLTAVGFPQMTLDFDAICETAPTSLQISYQTLLSAFNNKTLVMVRVQNPVVTGSSEGAAYYHRFSGYVTSLVLNQATTEFINFSGTIQSTGTIDFDPAA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.