Basic Information | |
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Taxon OID | 3300012666 Open in IMG/M |
Scaffold ID | Ga0157498_1002756 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2999 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.6244481 | Long. (o) | -80.9227115 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001561 | Metagenome / Metatranscriptome | 670 | Y |
F078705 | Metagenome | 116 | N |
F093847 | Metagenome | 106 | N |
F095470 | Metagenome | 105 | N |
F103253 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157498_10027562 | F093847 | N/A | LTINLRKTFARVVYYIEQTDQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTAHNKDLISL* |
Ga0157498_10027563 | F078705 | N/A | MYIAVDAMAIEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRXXXXKRDMVK* |
Ga0157498_10027564 | F103253 | N/A | MEEKVWIYLSKTGTGFELKGADIVSAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPENLKKSISENYTFDEEETENANS* |
Ga0157498_10027565 | F001561 | GAGG | MQTREQKLVYLKKTIETLWHGVSDTREGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLTRYPNDPYAKSKLKELTK* |
Ga0157498_10027569 | F095470 | GGA | MKKVIWVANESEIWHLYRHFEPIVEDVTGFNFKEDLCSETVKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFIKQAENNAKIEVK* |
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