Scaffold Ga0157498_1001435

Overview

Basic Information

• Taxon OID: 3300012666
• Scaffold ID: Ga0157498_1001435
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4265
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F039482	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157498_10014355	F039482	AGG	MSDRLELTEHTVFILNSIKLLPHYTLPVYVTPGHTRLTPLKLWTVEELKDAGAVESSAFLWPRHTLASGG*
Ga0157498_10014356	F004450	GGA	MNWVAAALVALVMSTAYLLDGPSEHEARVDTVEEKIQKLCGENAGWKLLGDGSVQCYTHRGFKTRKVTL*