Scaffold Ga0157210_1008941

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1008941
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1822
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015600	Metagenome / Metatranscriptome	253	Y
F022197	Metagenome / Metatranscriptome	215	Y
F035304	Metagenome / Metatranscriptome	172	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10089412	F022197	AGGA	MTLETETMEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIAKVMNDELSWDDAQWDIEHNVFVPELGEWHLK*
Ga0157210_10089413	F035304	GGAG	VNPNTLIDYIKIHIISLEQDLENEDGADSIVPYLEGAIDVSRHYLSVLEDTID*
Ga0157210_10089414	F015600	AGGA	MMNTTLEPRLQKLIDMGESGTDILHGELKNLMLQAETEYIEIEKEEREDGYSDAMLSMERTRAEGRMDALVEVYALTYQLAFAINDRIKKNG*
Ga0157210_10089417	F080058	GGAGG	MNEYTVELIHEPSGAYMNFVMFSDLKEDEVQLSKEIWADMSVVVLDYKEGEE*