Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1008941 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1822 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015600 | Metagenome / Metatranscriptome | 253 | Y |
F022197 | Metagenome / Metatranscriptome | 215 | Y |
F035304 | Metagenome / Metatranscriptome | 172 | Y |
F080058 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157210_10089412 | F022197 | AGGA | MTLETETMEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIAKVMNDELSWDDAQWDIEHNVFVPELGEWHLK* |
Ga0157210_10089413 | F035304 | GGAG | VNPNTLIDYIKIHIISLEQDLENEDGADSIVPYLEGAIDVSRHYLSVLEDTID* |
Ga0157210_10089414 | F015600 | AGGA | MMNTTLEPRLQKLIDMGESGTDILHGELKNLMLQAETEYIEIEKEEREDGYSDAMLSMERTRAEGRMDALVEVYALTYQLAFAINDRIKKNG* |
Ga0157210_10089417 | F080058 | GGAGG | MNEYTVELIHEPSGAYMNFVMFSDLKEDEVQLSKEIWADMSVVVLDYKEGEE* |
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