Scaffold Ga0157210_1001396

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1001396
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7463
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F027179	Metagenome	195	Y
F043935	Metagenome	155	Y
F054036	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10013962	F054036	N/A	VTGSLNIPDDAVFHKDVVGQLYAVEFNNKMHMLQVCLIAESPDGEFETLHQYDEMQANEILDLRYDEAEFEEIVEH*
Ga0157210_10013966	F027179	AGGAG	MKFIYMADGLFLYETENGYIVTDQNDKILKQAKSHVTCSLYISKTLQSRRAAEREAIEKINQDQNKNRAL*
Ga0157210_10013967	F002398	AGGAG	MIPLMLFTLINLDPIKNFVSLKTYISENAKIHCYVYFINEDIPDFPRVNIIEKSRSDFFEYLDTIGIEHTNVGNYYFFKKKQK*
Ga0157210_10013969	F043935	N/A	MTNKELKILDEQIQYLCNQYQDRIKEIRQVTGINTSYTFMKEAETIEYLYKCVLENRKHEKSNYFSCGTSGWHITYLRNKKTYKKGEKFVIKIYFSFVEADTYE*