NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1001008

Scaffold Ga0157210_1001008


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1001008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9521
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031363Metagenome182Y
F035185Metagenome172N
F041021Metagenome / Metatranscriptome160N
F045580Metagenome / Metatranscriptome152Y
F068826Metagenome / Metatranscriptome124N
F088873Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100100821F035185N/AMGMSFEFDEDEGEFSINYQKVLHQDTFLPVTRLLAADLIKSQYMSIGDFIKSLNDNVLVELNEISADENHPHFEEIILLTEMLAAAEGTNFGGTPQVHQRLNMFITWLIFESLKRKGLVKIHYENLSFGDDMADKIVIEKID*
Ga0157210_100100823F031363N/AMNPSEYDGFYFLPGEEEDELCFSFFEFEGKFANGEKVESHNPIGDVWHIAFFTEDEEGNPQYNDSFEAIFSNPEVYVKNLCGTGLYGCVLRKTDKSVKWFNDYLNKVKNRVTIMKLKSE*
Ga0157210_100100825F045580AGGAGMMSKVSLLLIFFLLIIIVGPILTIWSLNTLFPVLAIPYSIETWCAAGIIAGVIRGDSLSLKGK*
Ga0157210_100100827F041021GGAMPKFIVETLQTFHECHIVEAENVEQALKIADASDYNASLHLGSTLVDIQKFSESKLKRWRERESYFFEGYAAVEDGRLVYRKPDGTLNGNMPSQEINL*
Ga0157210_10010083F068826N/AMTEITKLITESLAVGLSDRSIIELMVMEGLPQEACPEILRCVKTTITDQIGQVTE*
Ga0157210_10010085F088873AGGAMYFGMFTTEGNQKVAAIVEFAKTNGAEWENVLPMLNNLALSNPMFREANDTVVREMVYDACSFTSDFYV*

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