Scaffold Ga0157210_1000627

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000627
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13608
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100062711	F001059	AGG	MATYDIDALKSDLPTAKELAQFVYDRTQIALDLVGKPKEDQYQVAKNALEGKKVPADYITNDNPYVDKRELIPVDEIKKLPPRSEDLPPIESRVNFFGATNMPHPFDPQSDKKVQINFWKYDSGLITFQIMGPLEQVAIGERINKFGQTVPEKYSYIDPRTEESVLRRPDGTFTEKGRGLYAFCSGEKGAGIWSMIDKSTMAIAAKNITNPWA*
Ga0157210_100062712	F027490	GAGG	MSGYGQVLSGGVSMRKGVSKGINDKLKSRETEIKHRDMVADAVNNAYKVDTLSSQHTNNIHNGDKFTKPFVPKKI*
Ga0157210_10006273	F005087	GAGG	MSLFIQSANALVSRVAQWVGAIPSALSITATSYDPETGEITTSADPRQLVYAGDFIANGINNFTYVLAVSSTTITVSDPEANWDGLSYPGVTIMKMPTQSALEIQASIQLAELKMRVIELPGLRSNPYDLLDPSVLITDEQGMAPIPADMNWPILFFQESPAPNTPENAQAFGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGPNYIFTPNPGQGTIMKAYYIRTFPFLFGPTEDPLMPVVQNNAALASFPEGYMYGTLWAYYDKNKNNEEAQKWDGRFNDAYGKIEDQNFKDKWSGGDRHLTSEFQPRDYRYSFK*
Ga0157210_10006274	F000857	GGAG	MELDKDEIPEVNEDYFMKGNLEGGIDGVFRKNDKLFNEVKSGTWSQTFKTENIDYKVGAVDGNRYVQYDQKNVEAVRQYCKDRREFYTRMGTTDNPIFAGTFEAMNLPKCFAHEISSKWFNNRPWELIKRDKADKIKFYAIVNEFYSDFVCHPSGKIPLPYNPAIATK*
Ga0157210_10006277	F003521	AGGA	MKSLVKGIREAFNRRTRVEHTYKEASHEQRTLVLQNGECASRLLLNQDFALMFNLYRFYLLERLEDDKTDADRISNAHFVAGVRDFIAFVEKQEYLGKVALKKAETLEKKG*
Ga0157210_10006278	F004695	AGGA	MLDKQNIIVDGIESPSGNGDIVRKVAHEIYVKMVDYLRLTQSKNTYNRFTDYQYLNIPVSNSTEPIRGIDYIHPVVTPGIDYATAIATKCLMPNGKVEFEFERFTEQDSEQARQATEMVKYMINSKNDAYQVIRDWAQDAFLHKNGIVMVSPIRKPITQYKEVEGTRDQLRSFEIMAGEKGLTAKRQQMRKIDVDLQGAAMEAMSSEESDTEANMADDMSDALRNNTIYRAKYKMTGYSTEIKIKHIAQHYWVCNPTIPQIQDQDFCGFYDPMTIHEAKELFPYIDMEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWLRRDIDNDGEEELIECCFSGSYVLYVKEVEFIPVANMCPKPIVGNFFGYSLGERLVPMQEYATAIARAEMAFAMQSSTPRIGVNPEFVDAEEIQRGVSALFILDRKFDPAKHVYEFEPMQGNLAYVQSAMQRFESDKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGVRDMIYLMWRTMIQYADDYNIQQLAGVVSKGLPFLDAQSMENFEFIDRKLINIDLALGFMSEENRLTRQQLIVQTQTQFAQAVAMLDPSVPELFVKVRRPYEDTLRVLGIKDVDAYLPTMEEAGRMAQARAEKGPSMDDQEKQSKMELNKASVGEKVANAALLVKKAEDIDMDNYYEGIAAKRGKLSAVQID*