Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000595 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14319 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (69.23%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002515 | Metagenome / Metatranscriptome | 552 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F039631 | Metagenome / Metatranscriptome | 163 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
F081245 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100059512 | F002598 | AGAAGG | MATKLYTIESLLVGKNYRSRTRHFEGEIVSAEKREGIWYGENTEAYLIGVNAKGKLHTQYATIAVKVGE* |
Ga0157210_100059519 | F048982 | GGAG | MTISTELRDVLSTCRQIRGNDRDSGTHYLLGYLWASIPDKEQLRIAKLFAKDLEEQNK* |
Ga0157210_100059523 | F081245 | N/A | MGYVKSLELEYYLADEPKNELAIMLDELILKGEYK* |
Ga0157210_100059525 | F039631 | AGG | MNTLDKNTIKHSRYGHLDLEQRILLGATMVANGEVVSFRGASADTYNKVMALANKIKQDREFPQCPCEECI* |
Ga0157210_10005956 | F011487 | AGGAG | MGNIADEFYDEYYATTCPSCRENAVDEYEDKCTHCLLEEMSATYNEDIALEMSLGLDY* |
Ga0157210_10005957 | F002515 | N/A | MKKTNEELRKLMELRRSNAASAVPSKKAYNRKKCQSEMLQYKYQQKGE* |
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