Scaffold Ga0157210_1000595

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000595
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14319
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (69.23%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F002598	Metagenome / Metatranscriptome	544	Y
F011487	Metagenome / Metatranscriptome	290	Y
F039631	Metagenome / Metatranscriptome	163	Y
F048982	Metagenome / Metatranscriptome	147	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100059512	F002598	AGAAGG	MATKLYTIESLLVGKNYRSRTRHFEGEIVSAEKREGIWYGENTEAYLIGVNAKGKLHTQYATIAVKVGE*
Ga0157210_100059519	F048982	GGAG	MTISTELRDVLSTCRQIRGNDRDSGTHYLLGYLWASIPDKEQLRIAKLFAKDLEEQNK*
Ga0157210_100059523	F081245	N/A	MGYVKSLELEYYLADEPKNELAIMLDELILKGEYK*
Ga0157210_100059525	F039631	AGG	MNTLDKNTIKHSRYGHLDLEQRILLGATMVANGEVVSFRGASADTYNKVMALANKIKQDREFPQCPCEECI*
Ga0157210_10005956	F011487	AGGAG	MGNIADEFYDEYYATTCPSCRENAVDEYEDKCTHCLLEEMSATYNEDIALEMSLGLDY*
Ga0157210_10005957	F002515	N/A	MKKTNEELRKLMELRRSNAASAVPSKKAYNRKKCQSEMLQYKYQQKGE*