NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000595

Scaffold Ga0157210_1000595


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000595 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14319
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F002598Metagenome / Metatranscriptome544Y
F011487Metagenome / Metatranscriptome290Y
F039631Metagenome / Metatranscriptome163Y
F048982Metagenome / Metatranscriptome147Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100059512F002598AGAAGGMATKLYTIESLLVGKNYRSRTRHFEGEIVSAEKREGIWYGENTEAYLIGVNAKGKLHTQYATIAVKVGE*
Ga0157210_100059519F048982GGAGMTISTELRDVLSTCRQIRGNDRDSGTHYLLGYLWASIPDKEQLRIAKLFAKDLEEQNK*
Ga0157210_100059523F081245N/AMGYVKSLELEYYLADEPKNELAIMLDELILKGEYK*
Ga0157210_100059525F039631AGGMNTLDKNTIKHSRYGHLDLEQRILLGATMVANGEVVSFRGASADTYNKVMALANKIKQDREFPQCPCEECI*
Ga0157210_10005956F011487AGGAGMGNIADEFYDEYYATTCPSCRENAVDEYEDKCTHCLLEEMSATYNEDIALEMSLGLDY*
Ga0157210_10005957F002515N/AMKKTNEELRKLMELRRSNAASAVPSKKAYNRKKCQSEMLQYKYQQKGE*

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