Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000309 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22657 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (69.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013503 | Metagenome | 270 | Y |
F021045 | Metagenome / Metatranscriptome | 220 | Y |
F029367 | Metagenome | 188 | N |
F031035 | Metagenome | 183 | Y |
F066584 | Metagenome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100030910 | F029367 | AGGAG | MKPEHSDFDCMVCEHPDAPGVDLECYFDAQTTNLWFVYIGDALITDLLRDTIIQSLERGYVKACKEEADNNALDFALARYESKHYET* |
Ga0157210_100030916 | F013503 | GGA | MTFAKPTPKNQETQFDEVQKLMCSVPGCGKRWSVHISGDRPKCSAHQWSKDPTEYRRPIIAKPVSQTVQQWYEKENF* |
Ga0157210_100030928 | F031035 | GGA | MNKELINLRIQDLIARGKQLEQELQQINGALQQCQWTLAELEKEPENKPEE* |
Ga0157210_100030939 | F021045 | N/A | MAGSSVLRTAGQTVALSVTSTAHAAVLIDDPTNEQVNYSSFLNTGASPIAVRWGPTDPGAPVFPVDGTNGDFVLPAGMTRPLIVATPVTPYYLTAKSNSATAGILYVTPSVYQS* |
Ga0157210_10003099 | F066584 | N/A | MKLDKYTQHSIDGPYSAKPSLVDKVLFWLSGFVAGLIFTLLITGN* |
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