Scaffold Ga0157210_1000254

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000254
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25479
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063693	Metagenome	129	Y
F088892	Metagenome	109	N
F088897	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100025417	F088897	AGGAGG	MIYRPENIINLYVWEQFKTHAPAFYNLYGPTSGGPDIVPFFPAPANNLPTAVIENDLPYVMFDKFSRVRGGYKYFYPIKTDQMRYTIVGGSLYDINRNQQDRYATTINLTSLIQNILDREDDAARDINEFAKTLPDYNDPNYPELNRYYFHCVNVFQSGFTTTQQEVSDFMEYNPTRDLIIKYDYHAKQFNE*
Ga0157210_10002545	F063693	N/A	MAKIHIKSDEYSSLVKEFLEKYIRQETPYNLTVHESNADFCVSLFTPEYPAEQRFFAYIYNNDEAMEELASKIYYQCSKAEIRVNKLSKRSMPRDEYEIDFKCPTLCINLTNDSVEIDEEVYALAIGQGIVSYLNPGTVFDTFSVKDKIKKPGDKSFVNRKYVQQPTNNSKLLFKK*
Ga0157210_10002549	F088892	N/A	MDYLDGLQKLPNKPKVSYVENDAEYGLYVWKTETGRIFGDGDGSFMNIPARKYDITAINRITQAAAHYGAGPGKAVFMPGVTRITDEEHSVQIDRMKQGYIPSEFDTGAFADAAKGLQKHGND*