Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000146 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36305 |
Total Scaffold Genes | 53 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (71.70%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F016519 | Metagenome / Metatranscriptome | 246 | N |
F041756 | Metagenome | 159 | N |
F051078 | Metagenome / Metatranscriptome | 144 | N |
F085678 | Metagenome | 111 | Y |
F091938 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100014622 | F016519 | N/A | LNRAIKLSDMDGWSINMTQYLWQVKSGNEVLIVATSITLKDLMATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEARDNPDRYGVDLHLYKDSLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQELPTHFFSINKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYICL* |
Ga0157210_100014623 | F091938 | N/A | MIVVELRQGIGLDIEFNDTICHIIDDGGPHDKLFSYSGILIKLPFLSIYIGEFEEIGELIKGDKPTGE* |
Ga0157210_100014627 | F085678 | N/A | MNVEMLEEHDDGSATYTFDLNWEERNLLLNLGIITALKNGVNEGAKYVSNTDLGYTQCGTPDSIHGEGKQPRESGQP* |
Ga0157210_100014632 | F051078 | AGGA | MDSSTSLRPNDIALILRPTIVDGVYQKHFQVLVSGFGPLTISEDDINNLIGMATILAATVQYMEEDEQLANKLVEYCGKMFGDVGDFFYNADHDSFGDGNFTIDTKTVGGIQ* |
Ga0157210_100014642 | F041756 | AGGA | MKLHELEDLIMAAWITKEDIDSILWVLMDREKQPDEDELANLLIGLHSLHDARMCKLFEGYDTVLKTNKVTYKGYGIPKNPPTL* |
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