Scaffold Ga0157210_1000117

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000117
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41335
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012775	Metagenome	277	Y
F060919	Metagenome / Metatranscriptome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100011729	F012775	AGG	MKLFSQMIRPLIDLGLKIRYRRWSEAYYIYRYEEKLMDSLGNIFYHSWEDFIRLHAHILDNAGPDWEIYEEVEFDNL*
Ga0157210_100011746	F060919	GGA	MTGREALDKLQAGFTLRRESWEPDEKCKAYFSDDLWSIRVECDSISPAPEHVPDDPKFAGYMSIFDAIDAGEFLMDDWEIVE*
Ga0157210_100011748	F090404	GGAGG	MKFADVIASLMAGKRVHKTNWESTTAFFLFDNEDNTFVFYEVLDGKECRIQIYTELMLSPKDLISDFWEIIE*