Scaffold Ga0157497_1001477

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1001477
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4303
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027415	Metagenome / Metatranscriptome	194	Y
F051879	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_100147711	F027415	GGTGG	MDLGKLKEFVMNDKIFTISLLIAVVTLIGSVTFYQHAQLQAIKSNVESAIVKGIDPIAVRCAYATERDVVCVAYGASHQSSTQKPSK*
Ga0157497_10014773	F051879	AGG	MNLIEKKNQLIVEKMKLDKFFSMFLEKFERQMDPDKIDTPVWKLYKTKLKEYEKIQHEIKATQYWIDKENNVQYS*