NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157497_1001073

Scaffold Ga0157497_1001073


Overview

Basic Information
Taxon OID3300012664 Open in IMG/M
Scaffold IDGa0157497_1001073 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5188
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NamePefferlaw, Ontario
CoordinatesLat. (o)44.25162Long. (o)-79.2626Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074569Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0157497_10010738F074569AGGAMKEQLLALAYLREDDVFGSSERDEFDCLIALIEDGTIDTFEELAKYGVE*
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