NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157497_1000482

Scaffold Ga0157497_1000482


Overview

Basic Information
Taxon OID3300012664 Open in IMG/M
Scaffold IDGa0157497_1000482 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7839
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NamePefferlaw, Ontario
CoordinatesLat. (o)44.25162Long. (o)-79.2626Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011078Metagenome / Metatranscriptome295N
F033349Metagenome / Metatranscriptome177N
F037638Metagenome / Metatranscriptome167N
F059763Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0157497_10004821F033349N/AYVYTDKQVDDYLMNHHFDELEPYMIKKDVYFGGCVETNLVGIESERFFYLEPDKFTIIFMLGHKTNFL*
Ga0157497_100048216F011078N/ALKKADIILELSKADWLTQATRNIAKDNELARELYQFYFLTVLEKPDEQIEKIYGDGYIQFWTIRLLYLAINGNRHPFGNSRIYDQYDVYELDIAEEDDLLLEREETEQIELNRINKINQVTESAYFYERELFKLWCSGMSARAIHRQTDISVREVLRVIKIMKERCIQK*
Ga0157497_100048217F059763N/AMYTEIIGIACLSIIIVNFGKPADILKRLIYGNDFSNWKRMKPLDCAFCLSWWMGVVYFVHTYGLVGILYASISTVIVALLETKI*
Ga0157497_100048218F037638N/AMTNIEFILSLQPLYDNWKKTQVFNPTPEQGAMLNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPKRRRKNEQ*
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