Scaffold Ga0157497_1000039

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1000039
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30091
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_100003917	F093876	N/A	MNLFRKKKEQIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAIVIDVPYNEFKKHFQELKSNIITNDYIISRG*
Ga0157497_100003922	F072341	N/A	MSKELAASVQQSFNRSLSAEERAIAECISSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPEAEIVRAEPTNPIDALHADAERYKNGKETWVEISAPYNCQRLFKQGIYKKSMWEPEVWARFEDIAKQKVEAKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINNG*
Ga0157497_100003927	F066778	N/A	MSYNREPDWNKLKPEIDWDEMEEKLADKLSTYINQNKIKQTVMNQSVVKSQKFVRDWNGPSGTIYYFDLVLENGEVGQVGVKDMQSPKIAVGATIHYIAEERTGPTGKKSTNFKMQNPMQYPGTTAQSAPSGAVNSSSNYRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGESVIETKLAITNESADDEMPF*
Ga0157497_100003933	F077297	N/A	MTQQAQNQIKAAVVIVVAITICATMQIMYIALKDSKKAIEGYERRADRATHVIDSLEATNAQRMLQIEELNQQLERNTQIYEANINAIDSLDKHGLRRAMHNLLSSLTEERYPGQLNE*
Ga0157497_100003934	F047677	GAG	MSWIKSIFSNDKDASHKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGMGLTVIESIFTKKKSNDSTSSESN*
Ga0157497_100003935	F084221	N/A	MSTNQQQIAEGVTGTVSSILLSVPAWMLDVEFALKIFCLLLSAVASIFTIYKMSKKKR*
Ga0157497_100003946	F082692	N/A	MTNPHENIILSMTLLRSGAQGKTKTFQHASGIHHARLKVWQIRAINYTILITGVSLIGLTIYSAL*