Scaffold Ga0157497_1000031

Overview

Basic Information

• Taxon OID: 3300012664
• Scaffold ID: Ga0157497_1000031
• Source Dataset Name: Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34037
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Pefferlaw, Ontario
• Coordinates
  • Lat. (^o): 44.25162
  • Long. (^o): -79.2626

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F021910	Metagenome	216	Y
F060589	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_100003148	F060589	AGGA	MDEQKHKHRCAVRQLIIWRRQWGLKAFREYMHKHREKLSWQLVRDFEDQWLKGNRADEYGEWK*
Ga0157497_100003154	F021910	AGGAGG	MSRLHDNYYEPDDYDDRSDEIEERTWQLMKVGAAYDYRTSSAISEALSEMGVDDAKALQAVIDSGNYEHIGRKIMMMAEAYMEHFAKDTAENEIND*
Ga0157497_100003159	F002539	GGAGG	MPMGNYLPIGGSMNNDHIWTAPGTDITIRWKLNGWIPPSELQEYKDKWKYFQNLPLRNLDDRAKEAYEAVLRKAKVARIK*