Basic Information | |
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Taxon OID | 3300012664 Open in IMG/M |
Scaffold ID | Ga0157497_1000004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 82354 |
Total Scaffold Genes | 80 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Pefferlaw, Ontario | |||||||
Coordinates | Lat. (o) | 44.25162 | Long. (o) | -79.2626 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F006586 | Metagenome | 369 | Y |
F008185 | Metagenome / Metatranscriptome | 337 | Y |
F011759 | Metagenome / Metatranscriptome | 287 | Y |
F015331 | Metagenome / Metatranscriptome | 255 | Y |
F027841 | Metagenome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157497_100000413 | F027841 | AGGAG | MAKRPVKPEVEEVELAENETFISDDDIDIEVVVAEETNDVYVKFSGFADTEDAEEYAEFLAETLPLLLFETTRLH* |
Ga0157497_100000433 | F011759 | GGAGG | MKEDLIADLWHVVIEHIPEKARKDVAADFVNTLLDYGVKESVLESLMGVDPFLDDAISYATDGEGEEDDYYEDED* |
Ga0157497_100000468 | F008185 | GGA | MPTTFKHAVNKDIGTTPVDVIQVPVGFRVTVIGCNIANTTDYDTVIVDVQVVDDSSTAAYYIKGIVIPPNTSLKLITNGEKLILPETAGLRITSDTDNSIDTVISYVELS* |
Ga0157497_100000471 | F015331 | N/A | MSLHNDTTFWTTLQWPAAPNIDDYAVFESYCSGRVLLLGSTKLLLPLATEAWDLEPKYADAKIKNKDWFTLDEHWDTIIVDGALALGEDYCKRLLETVLPNCDRFIARAFLNPNWPTKYAVYFPHAEELTPQPQEHPINEVYTFYIWNNKQS* |
Ga0157497_100000479 | F006586 | N/A | MQIESDRDFSKLREQFADWRRRFPMFKHDVNLIEHIIEDHIQNHSIIMVQYRQTKSRSYLEKAQLEIDAINRVIATVEKIELIALLAR* |
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