NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157497_1000004

Scaffold Ga0157497_1000004


Overview

Basic Information
Taxon OID3300012664 Open in IMG/M
Scaffold IDGa0157497_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82354
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NamePefferlaw, Ontario
CoordinatesLat. (o)44.25162Long. (o)-79.2626Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006586Metagenome369Y
F008185Metagenome / Metatranscriptome337Y
F011759Metagenome / Metatranscriptome287Y
F015331Metagenome / Metatranscriptome255Y
F027841Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0157497_100000413F027841AGGAGMAKRPVKPEVEEVELAENETFISDDDIDIEVVVAEETNDVYVKFSGFADTEDAEEYAEFLAETLPLLLFETTRLH*
Ga0157497_100000433F011759GGAGGMKEDLIADLWHVVIEHIPEKARKDVAADFVNTLLDYGVKESVLESLMGVDPFLDDAISYATDGEGEEDDYYEDED*
Ga0157497_100000468F008185GGAMPTTFKHAVNKDIGTTPVDVIQVPVGFRVTVIGCNIANTTDYDTVIVDVQVVDDSSTAAYYIKGIVIPPNTSLKLITNGEKLILPETAGLRITSDTDNSIDTVISYVELS*
Ga0157497_100000471F015331N/AMSLHNDTTFWTTLQWPAAPNIDDYAVFESYCSGRVLLLGSTKLLLPLATEAWDLEPKYADAKIKNKDWFTLDEHWDTIIVDGALALGEDYCKRLLETVLPNCDRFIARAFLNPNWPTKYAVYFPHAEELTPQPQEHPINEVYTFYIWNNKQS*
Ga0157497_100000479F006586N/AMQIESDRDFSKLREQFADWRRRFPMFKHDVNLIEHIIEDHIQNHSIIMVQYRQTKSRSYLEKAQLEIDAINRVIATVEKIELIALLAR*

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