Scaffold Ga0157203_1009574

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1009574
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1638
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060908	Metagenome / Metatranscriptome	132	Y
F078705	Metagenome	116	N
F093847	Metagenome	106	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10095741	F103253	N/A	MEEKVWIYLAKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPEN
Ga0157203_10095742	F078705	N/A	MYIAVDAMAIEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDLLLIRGEFHYVRKKITMTDISNYRYCIGRNTESVPHLDSAKLHVANDYFYFSGYRKVTSKNEKINTKFVSENFNLVTIDNLKKYVKSKKDMVE*
Ga0157203_10095743	F093847	N/A	LTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSISKLKDNEATISSIQIKEEIFIGGIYVTVHNKDLISL*
Ga0157203_10095745	F060908	N/A	MTRKLDYTVSESITTQSKKRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISACPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL*