Scaffold Ga0157203_1002241

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1002241
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4389
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F038234	Metagenome	166	Y
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100224111	F003542	N/A	MSRVNFDYDLFSEKIGWDSQNKKYLIRVYEYLVDSMENNPAPTWVGIMRKMLGSNPKDVNPSSYYSSVRRCLKEIDVCSFDSVKRCMVKGKNWDRFVSDESWDWFIMRTGSCEYSTIIK*
Ga0157203_10022413	F007690	AGG	VDGIDKLNNMLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELHRESAWGNGDCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL*
Ga0157203_10022414	F018001	N/A	MLTIQNIGNLNGAQLNDWKVLTAGEDNRPELGKNIYIITFARMDNTGVMLDDRAGVIIDRNINPLLKGYHIKVVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK*
Ga0157203_10022415	F062757	N/A	MLTIQNIRKLGGRRLFGGWIITAVGGNPNEPQYILDINCNGPIGNRIDRCTVSLNRIGIVQRTLGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKQS*
Ga0157203_10022416	F038234	N/A	MLTIKNISSLKGKYIGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIECIRDKFEFIQFLIDELI*
Ga0157203_10022417	F017998	N/A	MNLERLDLEKYEELESERNNTFADTGFQHWVSTLKVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSVFK*
Ga0157203_10022419	F031098	N/A	MKTYYDIAIHTATKDVVKIKGVSYSQMMKIANDNPTLLKVEIVREYSKKISKY*