NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136633_1072958

Scaffold Ga0136633_1072958


Overview

Basic Information
Taxon OID3300012527 Open in IMG/M
Scaffold IDGa0136633_1072958 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0267Long. (o)163.8204Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030407Metagenome185Y
F037001Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0136633_10729581F037001GGCGGMTAKQRVVLGALRDAQHAHDGQAVSASQIAGVCPAPWWGRPDLVTQALVLLERHGLVLVAAGSTRAWKITAAGRLMLAPRRGPARE
Ga0136633_10729582F030407GAGVKPEHDARFRRIAEDYLERPGGDYAELLRRGQVRSPDGVDPQEWRAEIRAKARADKIRVITIRDGGRAIAARQRGVPKDQELAERSRELDRSEVLRGLAERARQLGHEIDKWLRHDQESITFCTRCPARIYARFDTATPVMDGEALDDACGSS*

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