Scaffold Ga0136633_1072958

Overview

Basic Information

• Taxon OID: 3300012527
• Scaffold ID: Ga0136633_1072958
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1445
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0267
  • Long. (^o): 163.8204

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030407	Metagenome	185	Y
F037001	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136633_10729581	F037001	GGCGG	MTAKQRVVLGALRDAQHAHDGQAVSASQIAGVCPAPWWGRPDLVTQALVLLERHGLVLVAAGSTRAWKITAAGRLMLAPRRGPARE
Ga0136633_10729582	F030407	GAG	VKPEHDARFRRIAEDYLERPGGDYAELLRRGQVRSPDGVDPQEWRAEIRAKARADKIRVITIRDGGRAIAARQRGVPKDQELAERSRELDRSEVLRGLAERARQLGHEIDKWLRHDQESITFCTRCPARIYARFDTATPVMDGEALDDACGSS*