Scaffold Ga0150984_109172893

Overview

Basic Information

• Taxon OID: 3300012469
• Scaffold ID: Ga0150984_109172893
• Source Dataset Name: Combined assembly of Soil carbon rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.97364
  • Long. (^o): -123.117453
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150984_1091728932	F079676	GGAG	MRSESAEPSAKIKVGDHVRALDGAYKGRVGTALRVVTSRDEGRTSHSILVSFPAVGADYLDASELEKAETSDE*
Ga0150984_1091728934	F081092	AGG	VSGYDDFIERLEAALADEEAREDFLEYLEGLTSEGRAEILAEADRREAEAEVA*
Ga0150984_1091728936	F020517	AGG	LSGQKRVSRDVRHYLVKRPNEIIAKRRSWNEVQAELLEKETSADEAMLFRGIVTADGTEYRDMYADSRTQVTEHTA*
Ga0150984_1091728937	F091480	N/A	RGQDATFYSQRADGPYYRWVYAEGAGRWRYSRVSLERPELNVLCVARWEAVPAALRDRLGEHYLE*