Scaffold Ga0138260_10559982

Overview

Basic Information

• Taxon OID: 3300012419
• Scaffold ID: Ga0138260_10559982
• Source Dataset Name: Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1089
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location

• Location Name: Antarctica
• Coordinates
  • Lat. (^o): -64.775
  • Long. (^o): -64.053
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015932	Metagenome / Metatranscriptome	251	N
F071645	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138260_105599822	F071645	N/A	MYLTGVGNMKATEKIKLMIRLEKGFKKLDLDELNLISKTLDKEIENKVKLFFRGEKLHKAVLKRELKKRLAGFADNDIENGFFTP*
Ga0138260_105599823	F015932	N/A	MNTTDILNRLNNLADTVCLDNGNVVRWCIDQNDLDNVPDRTARGILQQNGLRVSDLQTLLADGVLVCTASDDVVGAMVDDRCLHVTTDLVAVQQHLPNVLDRCW*